STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cwoe_5698KEGG: tgr:Tgr7_2550 malate synthase A; TIGRFAM: malate synthase A; PFAM: Malate synthase family protein. (525 aa)    
Predicted Functional Partners:
Cwoe_1088
TIGRFAM: citrate synthase I; PFAM: Citrate synthase; KEGG: mxa:MXAN_3519 citrate synthase; Belongs to the citrate synthase family.
  
 0.961
Cwoe_5814
PFAM: Citrate synthase; KEGG: mlo:mll3842 citrate synthase 2; Belongs to the citrate synthase family.
  
 0.961
Cwoe_1140
TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: noc:Noc_0873 acetyl-CoA synthetase.
  
 0.956
Cwoe_1141
PFAM: AMP-dependent synthetase and ligase; KEGG: bac:BamMC406_1226 AMP-dependent synthetase and ligase.
  
 0.956
Cwoe_2113
PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA4717 acyl-CoA synthetase.
  
 0.956
Cwoe_4225
PFAM: AMP-dependent synthetase and ligase; KEGG: dal:Dalk_0007 AMP-dependent synthetase and ligase.
  
 0.956
Cwoe_4442
PFAM: AMP-dependent synthetase and ligase; KEGG: dal:Dalk_0007 AMP-dependent synthetase and ligase.
  
 0.956
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
   
 0.940
fumC
Fumarate lyase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
    
 0.931
Cwoe_0195
KEGG: pmy:Pmen_0745 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.924
Your Current Organism:
Conexibacter woesei DSM 14684
NCBI taxonomy Id: 469383
Other names: C. woesei DSM 14684, Conexibacter woesei str. DSM 14684, Conexibacter woesei strain DSM 14684
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