STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ47152.1Cold shock-like protein CspD. (66 aa)    
Predicted Functional Partners:
EHQ45612.1
30S ribosomal protein S12.
   
 
 0.872
EHQ47983.1
Hypothetical protein.
  
 0.861
EHQ45952.1
Hypothetical protein.
  
 0.861
EHQ44800.1
Hypothetical protein.
  
 0.861
EHQ47481.1
Hypothetical protein.
   
 0.854
EHQ44785.1
30S ribosomal protein S17.
   
 
 0.854
EHQ44775.1
50S ribosomal protein L15.
   
   0.851
EHQ44777.1
30S ribosomal protein S5.
   
 
 0.851
EHQ44787.1
50S ribosomal protein L16.
  
 
 0.844
EHQ45231.1
30S ribosomal protein S21.
  
 
 0.841
Your Current Organism:
Coprobacillus sp. 8254BFAA
NCBI taxonomy Id: 469597
Other names: C. sp. 8_2_54BFAA, Coprobacillus sp. 8_2_54BFAA
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