STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ45906.1MJ0936 family phosphodiesterase. (183 aa)    
Predicted Functional Partners:
EHQ45907.1
Hypothetical protein.
       0.795
EHQ45170.1
Peroxiredoxin.
   
 
 0.788
EHQ47768.1
rdgB/HAM1 family non-canonical purine NTP pyrophosphatase.
  
  
 0.654
EHQ45905.1
PTS system, lactose/cellobiose family IIB component.
       0.484
EHQ46345.1
Hypothetical protein.
  
  
 0.483
EHQ47167.1
Hypothetical protein.
   
 
 0.411
EHQ47023.1
Exodeoxyribonuclease VII, small subunit.
  
    0.400
Your Current Organism:
Coprobacillus sp. 8254BFAA
NCBI taxonomy Id: 469597
Other names: C. sp. 8_2_54BFAA, Coprobacillus sp. 8_2_54BFAA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.