Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEU32999.1Hypothetical protein. (216 aa)    
Predicted Functional Partners:
EEU33001.1
Hypothetical protein.
 
 
 0.997
EEU33009.1
Hypothetical protein.
 
 
 0.997
EEU33000.1
Hypothetical protein.
 
 
 0.992
EEU33004.1
Hypothetical protein.
  
 
 0.970
EEU33003.1
Hypothetical protein.
 
     0.952
EEU33008.1
Hypothetical protein.
 
 
   0.919
EEU32998.1
Hypothetical protein.
  
    0.829
EEU33005.1
Phage tail tape measure protein, TP901 family, core region.
 
    0.829
EEU33002.1
Hypothetical protein.
       0.775
EEU32997.2
Hypothetical protein.
       0.664
Your Current Organism:
Fusobacterium nucleatum vincentii
NCBI taxonomy Id: 469604
Other names: F. nucleatum subsp. vincentii 3_1_36A2, Fusobacterium nucleatum subsp. vincentii 3_1_36A2, Fusobacterium sp. 3_1_36A2
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