EEU33311.1 protein (Fusobacterium nucleatum vincentii)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

EEU33311.1

Hypothetical protein. (283 aa)

Predicted Functional Partners:

EEU33312.1

0.951

EEU33313.1

0.943

EEU32097.1

0.773

EEU33314.1

0.562

EEU32234.1

0.559

EEU32041.1

0.519

EEU31334.1

0.519

EEU31338.1

0.519

EEU31339.1

0.519

msrB

0.473

Your Current Organism:

Fusobacterium nucleatum vincentii

NCBI taxonomy Id: 469604
Other names: F. nucleatum subsp. vincentii 3_1_36A2, Fusobacterium nucleatum subsp. vincentii 3_1_36A2, Fusobacterium sp. 3_1_36A2

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEU31334.1	EEU31338.1	HMPREF0946_01994	HMPREF0946_01998	Hypothetical protein.	Hypothetical protein.	0.843
EEU31334.1	EEU31339.1	HMPREF0946_01994	HMPREF0946_01999	Hypothetical protein.	Hypothetical protein.	0.842
EEU31334.1	EEU33311.1	HMPREF0946_01994	HMPREF0946_01384	Hypothetical protein.	Hypothetical protein.	0.519
EEU31338.1	EEU31334.1	HMPREF0946_01998	HMPREF0946_01994	Hypothetical protein.	Hypothetical protein.	0.843
EEU31338.1	EEU31339.1	HMPREF0946_01998	HMPREF0946_01999	Hypothetical protein.	Hypothetical protein.	0.828
EEU31338.1	EEU33311.1	HMPREF0946_01998	HMPREF0946_01384	Hypothetical protein.	Hypothetical protein.	0.519
EEU31339.1	EEU31334.1	HMPREF0946_01999	HMPREF0946_01994	Hypothetical protein.	Hypothetical protein.	0.842
EEU31339.1	EEU31338.1	HMPREF0946_01999	HMPREF0946_01998	Hypothetical protein.	Hypothetical protein.	0.828
EEU31339.1	EEU33311.1	HMPREF0946_01999	HMPREF0946_01384	Hypothetical protein.	Hypothetical protein.	0.519
EEU32041.1	EEU33311.1	HMPREF0946_00114	HMPREF0946_01384	LolC/E family lipoprotein releasing system, transmembrane protein.	Hypothetical protein.	0.519
EEU32097.1	EEU33311.1	HMPREF0946_00170	HMPREF0946_01384	Hypothetical protein.	Hypothetical protein.	0.773
EEU32097.1	EEU33312.1	HMPREF0946_00170	HMPREF0946_01385	Hypothetical protein.	Hypothetical protein.	0.946
EEU32097.1	EEU33313.1	HMPREF0946_00170	HMPREF0946_01386	Hypothetical protein.	Hypothetical protein.	0.777
EEU32234.1	EEU33311.1	HMPREF0946_00307	HMPREF0946_01384	Hypothetical protein.	Hypothetical protein.	0.559
EEU32234.1	msrB	HMPREF0946_00307	HMPREF0946_00284	Hypothetical protein.	methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.	0.477
EEU33311.1	EEU31334.1	HMPREF0946_01384	HMPREF0946_01994	Hypothetical protein.	Hypothetical protein.	0.519
EEU33311.1	EEU31338.1	HMPREF0946_01384	HMPREF0946_01998	Hypothetical protein.	Hypothetical protein.	0.519
EEU33311.1	EEU31339.1	HMPREF0946_01384	HMPREF0946_01999	Hypothetical protein.	Hypothetical protein.	0.519
EEU33311.1	EEU32041.1	HMPREF0946_01384	HMPREF0946_00114	Hypothetical protein.	LolC/E family lipoprotein releasing system, transmembrane protein.	0.519
EEU33311.1	EEU32097.1	HMPREF0946_01384	HMPREF0946_00170	Hypothetical protein.	Hypothetical protein.	0.773