Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGU16128.1Hypothetical protein. (128 aa)    
Predicted Functional Partners:
AGU16129.1
Hypothetical protein.
      0.643
EEU31731.1
Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.542
EEU31732.1
Hypothetical protein.
       0.542
EEU31733.1
Hypothetical protein.
       0.542
EEU31735.1
Hypothetical protein.
  
    0.513
EEU31734.1
Hypothetical protein.
       0.504
Your Current Organism:
Fusobacterium nucleatum vincentii
NCBI taxonomy Id: 469604
Other names: F. nucleatum subsp. vincentii 3_1_36A2, Fusobacterium nucleatum subsp. vincentii 3_1_36A2, Fusobacterium sp. 3_1_36A2
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