Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFL82720.1 | EFL82721.1 | HMPREF0189_01215 | HMPREF0189_01216 | Hypothetical protein. | Hypothetical protein. | 0.400 |
EFL82721.1 | EFL82720.1 | HMPREF0189_01216 | HMPREF0189_01215 | Hypothetical protein. | Hypothetical protein. | 0.400 |
EFL82721.1 | rlmB | HMPREF0189_01216 | HMPREF0189_01218 | Hypothetical protein. | RNA methyltransferase, TrmH family, group 3; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | 0.509 |
EFL82721.1 | rnr | HMPREF0189_01216 | HMPREF0189_01217 | Hypothetical protein. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.509 |
rlmB | EFL82721.1 | HMPREF0189_01218 | HMPREF0189_01216 | RNA methyltransferase, TrmH family, group 3; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Hypothetical protein. | 0.509 |
rlmB | rnr | HMPREF0189_01218 | HMPREF0189_01217 | RNA methyltransferase, TrmH family, group 3; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.907 |
rnr | EFL82721.1 | HMPREF0189_01217 | HMPREF0189_01216 | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | Hypothetical protein. | 0.509 |
rnr | rlmB | HMPREF0189_01217 | HMPREF0189_01218 | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | RNA methyltransferase, TrmH family, group 3; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | 0.907 |