Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFL82103.1 | EFL82530.1 | HMPREF0189_02087 | HMPREF0189_02293 | Competence/damage-inducible domain protein CinA; Belongs to the CinA family. | Nuclease-like protein. | 0.645 |
EFL82103.1 | EFL83769.1 | HMPREF0189_02087 | HMPREF0189_00847 | Competence/damage-inducible domain protein CinA; Belongs to the CinA family. | 5'-nucleotidase, C-terminal domain protein; Belongs to the 5'-nucleotidase family. | 0.630 |
EFL82103.1 | nadC | HMPREF0189_02087 | HMPREF0189_00586 | Competence/damage-inducible domain protein CinA; Belongs to the CinA family. | Quinolinate phosphoribosyl transferase, C-terminal domain protein; Belongs to the NadC/ModD family. | 0.663 |
EFL82103.1 | nadD | HMPREF0189_02087 | HMPREF0189_00285 | Competence/damage-inducible domain protein CinA; Belongs to the CinA family. | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.759 |
EFL82530.1 | EFL82103.1 | HMPREF0189_02293 | HMPREF0189_02087 | Nuclease-like protein. | Competence/damage-inducible domain protein CinA; Belongs to the CinA family. | 0.645 |
EFL82530.1 | EFL82831.1 | HMPREF0189_02293 | HMPREF0189_02132 | Nuclease-like protein. | Phosphoribosyl transferase domain protein. | 0.633 |
EFL82530.1 | EFL83769.1 | HMPREF0189_02293 | HMPREF0189_00847 | Nuclease-like protein. | 5'-nucleotidase, C-terminal domain protein; Belongs to the 5'-nucleotidase family. | 0.669 |
EFL82530.1 | guaA | HMPREF0189_02293 | HMPREF0189_01903 | Nuclease-like protein. | GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP. | 0.686 |
EFL82530.1 | nadC | HMPREF0189_02293 | HMPREF0189_00586 | Nuclease-like protein. | Quinolinate phosphoribosyl transferase, C-terminal domain protein; Belongs to the NadC/ModD family. | 0.623 |
EFL82530.1 | nadD | HMPREF0189_02293 | HMPREF0189_00285 | Nuclease-like protein. | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.626 |
EFL82530.1 | purA | HMPREF0189_02293 | HMPREF0189_01144 | Nuclease-like protein. | Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.627 |
EFL82530.1 | rdgB | HMPREF0189_02293 | HMPREF0189_01914 | Nuclease-like protein. | Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.623 |
EFL82530.1 | rnpA | HMPREF0189_02293 | HMPREF0189_00017 | Nuclease-like protein. | Hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.732 |
EFL82530.1 | upp | HMPREF0189_02293 | HMPREF0189_00313 | Nuclease-like protein. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.624 |
EFL82831.1 | EFL82530.1 | HMPREF0189_02132 | HMPREF0189_02293 | Phosphoribosyl transferase domain protein. | Nuclease-like protein. | 0.633 |
EFL82831.1 | EFL83769.1 | HMPREF0189_02132 | HMPREF0189_00847 | Phosphoribosyl transferase domain protein. | 5'-nucleotidase, C-terminal domain protein; Belongs to the 5'-nucleotidase family. | 0.684 |
EFL82831.1 | guaA | HMPREF0189_02132 | HMPREF0189_01903 | Phosphoribosyl transferase domain protein. | GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP. | 0.988 |
EFL82831.1 | purA | HMPREF0189_02132 | HMPREF0189_01144 | Phosphoribosyl transferase domain protein. | Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.545 |
EFL82831.1 | rdgB | HMPREF0189_02132 | HMPREF0189_01914 | Phosphoribosyl transferase domain protein. | Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.669 |
EFL83769.1 | EFL82103.1 | HMPREF0189_00847 | HMPREF0189_02087 | 5'-nucleotidase, C-terminal domain protein; Belongs to the 5'-nucleotidase family. | Competence/damage-inducible domain protein CinA; Belongs to the CinA family. | 0.630 |
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