Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEO35661.1 | rlmH | FMAG_01223 | FMAG_01318 | Putative RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Putative rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | 0.501 |
EEO35754.1 | EEO35757.1 | FMAG_01316 | FMAG_01319 | Conserved hypothetical protein TIGR03982. | Hypothetical protein. | 0.449 |
EEO35754.1 | EEO35758.1 | FMAG_01316 | FMAG_01320 | Conserved hypothetical protein TIGR03982. | Hypothetical protein. | 0.446 |
EEO35754.1 | EEO35759.1 | FMAG_01316 | FMAG_01321 | Conserved hypothetical protein TIGR03982. | Tetratricopeptide repeat protein. | 0.682 |
EEO35754.1 | lysS | FMAG_01316 | FMAG_01322 | Conserved hypothetical protein TIGR03982. | lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.420 |
EEO35754.1 | mutL | FMAG_01316 | FMAG_01317 | Conserved hypothetical protein TIGR03982. | DNA mismatch repair domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.601 |
EEO35754.1 | recJ-2 | FMAG_01316 | FMAG_01315 | Conserved hypothetical protein TIGR03982. | single-stranded-DNA-specific exonuclease RecJ. | 0.782 |
EEO35754.1 | rlmH | FMAG_01316 | FMAG_01318 | Conserved hypothetical protein TIGR03982. | Putative rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | 0.588 |
EEO35757.1 | EEO35754.1 | FMAG_01319 | FMAG_01316 | Hypothetical protein. | Conserved hypothetical protein TIGR03982. | 0.449 |
EEO35757.1 | EEO35758.1 | FMAG_01319 | FMAG_01320 | Hypothetical protein. | Hypothetical protein. | 0.781 |
EEO35757.1 | EEO35759.1 | FMAG_01319 | FMAG_01321 | Hypothetical protein. | Tetratricopeptide repeat protein. | 0.765 |
EEO35757.1 | lysS | FMAG_01319 | FMAG_01322 | Hypothetical protein. | lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.651 |
EEO35757.1 | mutL | FMAG_01319 | FMAG_01317 | Hypothetical protein. | DNA mismatch repair domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.679 |
EEO35757.1 | recJ-2 | FMAG_01319 | FMAG_01315 | Hypothetical protein. | single-stranded-DNA-specific exonuclease RecJ. | 0.441 |
EEO35757.1 | rlmH | FMAG_01319 | FMAG_01318 | Hypothetical protein. | Putative rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | 0.696 |
EEO35758.1 | EEO35754.1 | FMAG_01320 | FMAG_01316 | Hypothetical protein. | Conserved hypothetical protein TIGR03982. | 0.446 |
EEO35758.1 | EEO35757.1 | FMAG_01320 | FMAG_01319 | Hypothetical protein. | Hypothetical protein. | 0.781 |
EEO35758.1 | EEO35759.1 | FMAG_01320 | FMAG_01321 | Hypothetical protein. | Tetratricopeptide repeat protein. | 0.765 |
EEO35758.1 | lysS | FMAG_01320 | FMAG_01322 | Hypothetical protein. | lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.634 |
EEO35758.1 | mutL | FMAG_01320 | FMAG_01317 | Hypothetical protein. | DNA mismatch repair domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.650 |
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