Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFS24513.1 | EFS24520.1 | FUAG_00028 | FUAG_00035 | RsmE family RNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Hypothetical protein. | 0.507 |
EFS24513.1 | EFS24522.1 | FUAG_00028 | FUAG_00037 | RsmE family RNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Hypothetical protein. | 0.517 |
EFS24513.1 | EFS24523.1 | FUAG_00028 | FUAG_00038 | RsmE family RNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Hemolysin TlyA family protein. | 0.487 |
EFS24513.1 | EFS24524.1 | FUAG_00028 | FUAG_00039 | RsmE family RNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | C-terminal processing peptidase; Belongs to the peptidase S41A family. | 0.493 |
EFS24513.1 | dxs | FUAG_00028 | FUAG_00036 | RsmE family RNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.518 |
EFS24513.1 | rnj | FUAG_00028 | FUAG_00033 | RsmE family RNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.594 |
EFS24513.1 | rsmI | FUAG_00028 | FUAG_00040 | RsmE family RNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | YraL family putative S-adenosylmethionine-dependent methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.668 |
EFS24513.1 | yhbY | FUAG_00028 | FUAG_00034 | RsmE family RNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | YhbY family putative RNA-binding protein. | 0.705 |
EFS24513.1 | ylqF | FUAG_00028 | FUAG_00041 | RsmE family RNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.548 |
EFS24520.1 | EFS24513.1 | FUAG_00035 | FUAG_00028 | Hypothetical protein. | RsmE family RNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.507 |
EFS24520.1 | EFS24522.1 | FUAG_00035 | FUAG_00037 | Hypothetical protein. | Hypothetical protein. | 0.778 |
EFS24520.1 | EFS24523.1 | FUAG_00035 | FUAG_00038 | Hypothetical protein. | Hemolysin TlyA family protein. | 0.721 |
EFS24520.1 | EFS24524.1 | FUAG_00035 | FUAG_00039 | Hypothetical protein. | C-terminal processing peptidase; Belongs to the peptidase S41A family. | 0.720 |
EFS24520.1 | dxs | FUAG_00035 | FUAG_00036 | Hypothetical protein. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.777 |
EFS24520.1 | rnj | FUAG_00035 | FUAG_00033 | Hypothetical protein. | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.695 |
EFS24520.1 | rsmI | FUAG_00035 | FUAG_00040 | Hypothetical protein. | YraL family putative S-adenosylmethionine-dependent methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.741 |
EFS24520.1 | yhbY | FUAG_00035 | FUAG_00034 | Hypothetical protein. | YhbY family putative RNA-binding protein. | 0.725 |
EFS24520.1 | ylqF | FUAG_00035 | FUAG_00041 | Hypothetical protein. | Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.637 |
EFS24522.1 | EFS24513.1 | FUAG_00037 | FUAG_00028 | Hypothetical protein. | RsmE family RNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.517 |
EFS24522.1 | EFS24520.1 | FUAG_00037 | FUAG_00035 | Hypothetical protein. | Hypothetical protein. | 0.778 |
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