Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NuoGPutative ferredoxin hydrogenase. (585 aa)    
Predicted Functional Partners:
hymB
Protein HymB.
 
 
 0.999
nuoE
NADH-quinone oxidoreductase, E subunit.
 
 0.988
EES64777.2
Hypothetical protein.
 
 
 0.910
hydE
Iron-only hydrogenase maturation rSAM protein HydE.
 
  
 0.777
hydF
Hydrogenase maturation GTPase HydF.
 
   
 0.774
EES65225.1
Putative ferredoxin hydrogenase HydA1.
   
 
 0.759
hydG
Iron-only hydrogenase maturation rSAM protein HydG.
 
   
 0.747
nifJ
Pyruvate synthase.
   
 
 0.712
rnfB
Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
 
 
 
 0.638
gltA
Glutamate synthase (NADPH), homotetrameric.
    
 0.541
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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