EES62317.1 protein (Fusobacterium varium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EES62317.1

ABC transporter, permease protein. (215 aa)

Predicted Functional Partners:

metN

0.999

EES62318.1

0.999

metQ

0.999

metF

0.413

Your Current Organism:

Fusobacterium varium

NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EES62317.1	EES62318.1	FVAG_00006	FVAG_00007	ABC transporter, permease protein.	NLPA lipoprotein.	0.999
EES62317.1	metF	FVAG_00006	FVAG_02059	ABC transporter, permease protein.	Methylenetetrahydrofolate reductase (NAD(P)H); Belongs to the methylenetetrahydrofolate reductase family.	0.413
EES62317.1	metN	FVAG_00006	FVAG_00005	ABC transporter, permease protein.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.999
EES62317.1	metQ	FVAG_00006	FVAG_00008	ABC transporter, permease protein.	D-methionine-binding lipoprotein MetQ.	0.999
EES62318.1	EES62317.1	FVAG_00007	FVAG_00006	NLPA lipoprotein.	ABC transporter, permease protein.	0.999
EES62318.1	metN	FVAG_00007	FVAG_00005	NLPA lipoprotein.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.999
EES62318.1	metQ	FVAG_00007	FVAG_00008	NLPA lipoprotein.	D-methionine-binding lipoprotein MetQ.	0.965
metF	EES62317.1	FVAG_02059	FVAG_00006	Methylenetetrahydrofolate reductase (NAD(P)H); Belongs to the methylenetetrahydrofolate reductase family.	ABC transporter, permease protein.	0.413
metF	metN	FVAG_02059	FVAG_00005	Methylenetetrahydrofolate reductase (NAD(P)H); Belongs to the methylenetetrahydrofolate reductase family.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.616
metN	EES62317.1	FVAG_00005	FVAG_00006	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	ABC transporter, permease protein.	0.999
metN	EES62318.1	FVAG_00005	FVAG_00007	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	NLPA lipoprotein.	0.999
metN	metF	FVAG_00005	FVAG_02059	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	Methylenetetrahydrofolate reductase (NAD(P)H); Belongs to the methylenetetrahydrofolate reductase family.	0.616
metN	metQ	FVAG_00005	FVAG_00008	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	D-methionine-binding lipoprotein MetQ.	0.998
metQ	EES62317.1	FVAG_00008	FVAG_00006	D-methionine-binding lipoprotein MetQ.	ABC transporter, permease protein.	0.999
metQ	EES62318.1	FVAG_00008	FVAG_00007	D-methionine-binding lipoprotein MetQ.	NLPA lipoprotein.	0.965
metQ	metN	FVAG_00008	FVAG_00005	D-methionine-binding lipoprotein MetQ.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.998