Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES62389.1PTS system sorbose-specific iic component; Overlaps another CDS with the same product name. (260 aa)    
Predicted Functional Partners:
EES62390.2
PTS system, mannose/fructose/sorbose family, IID component; Overlaps another CDS with the same product name.
 
 0.999
EES63767.1
PTS system mannose/fructose/sorbose family IID component.
 
 0.992
EES62388.1
PTS system sorbose subfamily IIB component.
 
 
 0.981
EES62387.2
PTS system fructose IIA component.
 
 
 0.975
EES63765.1
PTS system sorbose subfamily IIB component.
 
 
 0.939
EES63768.1
PTS system fructose IIA component.
 
 
 0.935
EES62391.1
SIS domain protein.
 
    0.836
EES62392.1
SIS domain protein.
 
  
 0.826
fruA
PTS system fructose-specific EIIABC component.
  
  
 0.668
EES63132.2
Hypothetical protein.
  
  
 0.668
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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