Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES62564.1SWIM zinc finger domain protein. (563 aa)    
Predicted Functional Partners:
EES62560.1
Hypothetical protein.
 
     0.954
EES62562.1
Hypothetical protein.
 
     0.953
EES62563.1
Hypothetical protein.
 
     0.949
EES62561.1
ATPase family associated with various cellular activities (AAA).
 
     0.948
EES62565.1
Hypothetical protein.
       0.746
EES62566.1
Hypothetical protein.
       0.721
EES63069.2
Hypothetical protein.
  
     0.578
EES62567.1
Hypothetical protein.
       0.466
EES62568.1
Hypothetical protein.
       0.466
EES62569.1
SNF2 family N-terminal domain protein.
 
    0.459
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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