Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EES62596.1Rubredoxin. (537 aa)    
Predicted Functional Partners:
EES62543.1
Rubredoxin.
 
 
 0.962
EES63656.1
Rubredoxin.
  
 
 0.948
EES64118.1
Nitrite/sulfite reductase ferredoxin domain protein; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 0.948
EES62558.1
Rubredoxin.
  
 
 0.942
EES62559.1
Metallo-beta-lactamase domain protein.
 
  
 0.930
EES64095.1
Putative superoxide reductase.
  
  
 0.923
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.908
cobA
uroporphyrinogen-III C-methyltransferase.
  
 0.868
EES64899.1
Putative alkyl hydroperoxide reductase F subunit.
 
  
 0.858
hymB
Protein HymB.
  
  
 0.837
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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