Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES62612.1Permease, YjgP/YjgQ family. (358 aa)    
Predicted Functional Partners:
lptB
Lipopolysaccharide ABC transporter, ATP-binding protein LptB.
 
 
 0.998
EES62613.1
Permease, YjgP/YjgQ family.
  
 
0.998
cvpA
CvpA family protein.
 
     0.848
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
     0.804
EES64466.1
Outer membrane protein, OMP85 family.
 
   
 0.786
EES64173.1
ABC transporter, ATP-binding protein.
     
 0.785
EES62614.1
Peptidase, M16 family; Belongs to the peptidase M16 family.
  
    0.784
artQ
Arginine ABC transporter, permease protein ArtQ.
   
 
  0.772
EES62402.1
ABC transporter, substrate-binding protein, QAT family.
     
  0.769
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
   
 0.768
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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