Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
dhaBGlycerol dehydratase, large subunit. (554 aa)    
Predicted Functional Partners:
dhaC
Glycerol dehydratase, medium subunit.
 0.999
dhaE
Glycerol dehydratase, small subunit.
 
 0.999
EES62810.1
Propanediol utilization protein PduH family protein.
 
  
 0.939
pduB
Propanediol utilization protein PduB.
 
  
 0.934
dhaF
Glycerol dehydratase reactivation factor, large subunit.
 
  
 0.933
EES62816.1
ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
 
  
 0.915
EES62801.1
Hypothetical protein.
 
   
 0.809
EES62814.1
Hypothetical protein.
 
     0.760
EES62817.1
Aldehyde-alcohol dehydrogenase domain protein.
 
  
 0.750
pflB
Formate C-acetyltransferase.
   
  
 0.693
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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