Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csoS1AMajor carboxysome shell protein 1A. (92 aa)    
Predicted Functional Partners:
EES62815.1
Putative carbon dioxide concentrating mechanism protein CcmL.
 
 
 0.942
ccmL
Carbon dioxide concentrating mechanism protein CcmL.
 
 
 0.875
EES62813.1
Propanediol utilization protein PduL; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
 
  
 0.843
EES62817.1
Aldehyde-alcohol dehydrogenase domain protein.
 
   
 0.751
EES62816.1
ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
  
  
 0.696
eutJ
Ethanolamine utilization protein EutJ.
 
  
 0.675
EES62818.1
BMC domain protein.
 
     0.670
EES62811.1
BMC domain protein.
 
    
0.645
EES62810.1
Propanediol utilization protein PduH family protein.
  
  
 0.644
dhaF
Glycerol dehydratase reactivation factor, large subunit.
  
    0.628
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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