Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES62901.1Transcriptional regulator, IclR family, C-terminal domain protein. (252 aa)    
Predicted Functional Partners:
eda
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.
 
   
 0.603
EES63486.1
Transcriptional regulator, GntR family.
  
  
 0.561
EES62903.1
Kinase, PfkB family.
 
   
 0.527
EES64960.1
Transcriptional regulator, GntR family.
  
  
 0.506
EES64420.1
Transcriptional regulator, GntR family.
  
  
 0.505
EES62900.1
Hypothetical protein.
 
  
 0.496
EES64806.1
Transcriptional regulator, GntR family.
  
  
 0.442
EES62536.2
FCD domain protein.
  
  
 0.439
EES62355.1
Transcriptional regulator, GntR family.
 
  
 0.435
EES64792.2
Transcriptional regulator, AraC family.
 
  
 0.415
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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