Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbsBD-ribose-binding periplasmic protein. (292 aa)    
Predicted Functional Partners:
rbsC
Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.998
rbsA
Ribose transport ATP-binding protein rbsa.
 
 0.995
rbsC-2
Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.983
rbsD
D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.980
EES63747.1
Putative ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.977
EES62803.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
  
 
 0.951
EES64686.1
Putative sugar ABC transporter, ATP binding protein.
 
 0.951
alsA
AlsA ABC superfamily (atp_bind), allose transport protein (second module).
 
 0.949
EES63745.1
Hypothetical protein.
  
  
 
0.922
EES64688.1
Sugar-binding domain protein.
  
  
 
0.920
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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