Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES63170.1Peptidase M15. (162 aa)    
Predicted Functional Partners:
hydE
Iron-only hydrogenase maturation rSAM protein HydE.
       0.769
EES62945.1
Hypothetical protein.
  
     0.679
EES64638.1
Tape measure domain protein.
  
  
 0.613
EES63169.1
Putative membrane protein.
       0.560
EES63929.1
Hypothetical protein.
  
     0.550
EES64642.1
Hypothetical protein.
  
    0.543
EES63106.1
Phage protein F-like protein.
 
     0.526
EES64149.1
Hypothetical protein.
  
     0.521
EES64848.1
Conserved hypothetical protein TIGR03905.
  
     0.514
EES63232.1
Outer membrane efflux protein.
  
     0.483
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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