Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES63251.1Outer membrane autotransporter barrel domain protein. (1143 aa)    
Predicted Functional Partners:
hup-8
DNA-binding protein HU; Belongs to the bacterial histone-like protein family.
 
     0.779
EES62671.1
Hypothetical protein.
 
     0.744
hup-7
DNA-binding protein HU; Belongs to the bacterial histone-like protein family.
       0.732
EES63284.1
Outer membrane insertion signal domain protein.
  
     0.704
EES64573.2
Hypothetical protein.
  
    0.665
EES62733.1
Tetratricopeptide repeat protein.
 
     0.650
EES63454.2
PHP domain protein.
  
     0.647
EES63028.1
TonB-dependent receptor plug domain protein.
  
     0.644
EES62945.1
Hypothetical protein.
  
     0.635
EES65002.1
Tetratricopeptide repeat protein.
 
     0.627
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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