Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES63330.1PRD domain protein. (687 aa)    
Predicted Functional Partners:
EES63333.1
PTS system, Lactose/Cellobiose specific IIB subunit.
 
  
 0.936
EES63334.1
Putative galactitol permease IIC component.
 
  
 0.922
EES63332.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
 
    0.910
EES64553.1
Putative sugar-specific permease, SgaT/UlaA.
 
  
 0.843
EES64552.2
PTS system, Lactose/Cellobiose specific IIB subunit.
 
  
 0.836
FucA
Putative L-ribulose-5-phosphate 4-epimerase.
  
  
 0.767
EES62797.1
HTH domain protein.
 
  
 0.745
EES62438.1
Phosphotransferase system, EIIB.
  
 
 0.730
fruA
PTS system fructose-specific EIIABC component.
  
  
 0.706
EES63132.2
Hypothetical protein.
  
  
 0.706
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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