Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES63344.1ABC transporter, ATP-binding protein. (265 aa)    
Predicted Functional Partners:
livH
High-affinity branched-chain amino acid ABC transporter, permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.999
EES63343.1
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
EES63341.1
Receptor family ligand-binding protein.
 
 
 0.998
EES63345.1
ABC transporter, ATP-binding protein.
 
 
0.997
EES62402.1
ABC transporter, substrate-binding protein, QAT family.
     
  0.721
EES65078.1
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.721
EES63346.1
Methyltransferase domain protein.
       0.693
lptB
Lipopolysaccharide ABC transporter, ATP-binding protein LptB.
     
  0.684
EES64173.1
ABC transporter, ATP-binding protein.
  
 
  0.641
EES63862.1
ABC transporter, ATP-binding protein.
     
  0.628
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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