Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES64614.1VRR-NUC domain protein. (97 aa)    
Predicted Functional Partners:
EES64615.2
SNF2 family N-terminal domain protein.
 
     0.947
EES64617.1
Hypothetical protein.
 
     0.932
EES64613.2
Virulence-associated protein E.
 
     0.877
EES64611.1
Putative DNA-directed DNA polymerase.
 
     0.862
EES64609.1
Hypothetical protein.
 
     0.848
EES64610.1
Hypothetical protein.
 
     0.848
EES63101.1
Hypothetical protein.
 
     0.785
EES63589.1
Toxin secretion/phage lysis holin.
  
     0.764
EES64648.1
Toxin secretion/phage lysis holin.
  
     0.763
EES63125.1
Toxin secretion/phage lysis holin.
  
     0.762
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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