Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES64636.1Phage XkdN-like protein. (136 aa)    
Predicted Functional Partners:
EES64635.1
Core tail protein.
 
  
 0.964
EES64639.1
LysM domain protein.
 
  
 0.936
EES64642.1
Hypothetical protein.
 
  
 0.918
EES64643.1
Hypothetical protein.
 
  
 0.918
EES64644.2
Hypothetical protein.
 
  
 0.914
EES64640.1
Hypothetical protein.
 
     0.888
EES64638.1
Tape measure domain protein.
 
     0.887
EES64621.1
Phage portal protein, SPP1 Gp6-like protein.
 
  
 0.841
EES64631.1
Hypothetical protein.
 
    0.840
EES64630.1
Hypothetical protein.
 
     0.805
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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