Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES64646.1Peptidase M15. (140 aa)    
Predicted Functional Partners:
EES64647.1
Putative phage holin, LL-H family.
       0.737
EES64648.1
Toxin secretion/phage lysis holin.
       0.706
EES62945.1
Hypothetical protein.
  
     0.699
EES64645.1
Hypothetical protein.
       0.628
EES63106.1
Phage protein F-like protein.
 
     0.627
EES64638.1
Tape measure domain protein.
  
  
 0.613
EES63929.1
Hypothetical protein.
  
     0.607
EES64642.1
Hypothetical protein.
  
    0.543
EES63232.1
Outer membrane efflux protein.
  
     0.516
EES62941.1
Hypothetical protein.
  
     0.515
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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