STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dgoDD-galactonate dehydratase. (383 aa)    
Predicted Functional Partners:
EES64746.2
Hypothetical protein.
 
  
 0.929
EES64745.1
KDPG and KHG aldolase.
 
   
 0.755
EES64750.1
TRAP transporter, DctM subunit.
       0.744
EES64749.1
TRAP transporter, DctQ-like membrane protein.
       0.743
EES64747.2
Transcriptional regulator, IclR family, C-terminal domain protein.
 
   
 0.707
EES64748.2
TRAP transporter solute receptor, DctP family.
       0.668
EES63760.1
HpcH/HpaI aldolase/citrate lyase family protein; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.548
EES64684.1
BadF/BadG/BcrA/BcrD ATPase family protein.
 
    0.431
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.