Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbsA-2Ribose transport ATP-binding protein rbsa. (500 aa)    
Predicted Functional Partners:
mglC
Galactoside transport system permease protein MglC.
 
 0.994
mglB
D-galactose-binding periplasmic protein.
 
 0.987
rbsC
Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.908
rbsC-2
Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.894
EES63747.1
Putative ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.889
EES64688.1
Sugar-binding domain protein.
 
 0.850
EES62402.1
ABC transporter, substrate-binding protein, QAT family.
     
  0.745
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
   0.738
rbsB
D-ribose-binding periplasmic protein.
 
 0.716
EES63745.1
Hypothetical protein.
 
 0.694
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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