Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
mglCGalactoside transport system permease protein MglC. (339 aa)    
Predicted Functional Partners:
rbsA-2
Ribose transport ATP-binding protein rbsa.
 
 0.994
mglB
D-galactose-binding periplasmic protein.
 
 
 0.981
rbsA
Ribose transport ATP-binding protein rbsa.
  
 0.828
alsA
AlsA ABC superfamily (atp_bind), allose transport protein (second module).
  
 0.807
EES64686.1
Putative sugar ABC transporter, ATP binding protein.
  
 0.804
EES64688.1
Sugar-binding domain protein.
 
 
 0.804
rbsB
D-ribose-binding periplasmic protein.
 
 0.802
EES63745.1
Hypothetical protein.
 
 
 0.661
EES63670.1
Putative ribose transport ATP-binding protein rbsa.
 
  
 0.656
EES64792.2
Transcriptional regulator, AraC family.
       0.448
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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