Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES64793.1Hypothetical protein. (78 aa)    
Predicted Functional Partners:
EES62402.1
ABC transporter, substrate-binding protein, QAT family.
    
 0.965
atpC
ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
  0.813
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
 0.803
lptB
Lipopolysaccharide ABC transporter, ATP-binding protein LptB.
 
  
  0.781
EES64312.1
ABC transporter, ATP-binding protein.
 
 
  0.771
EES63862.1
ABC transporter, ATP-binding protein.
 
 
  0.761
EES64173.1
ABC transporter, ATP-binding protein.
    
 0.744
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
 
 0.724
EES63864.1
Cobalamin biosynthesis protein CbiM.
     
 0.714
EES65078.1
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
     
 0.712
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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