Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES64802.1TRAP transporter, 4TM/12TM fusion protein. (629 aa)    
Predicted Functional Partners:
EES64803.1
TRAP transporter solute receptor, TAXI family.
 
 
 0.994
EES64799.1
Hypothetical protein.
 
     0.653
EES64801.1
FAD binding domain protein.
       0.631
EES62898.1
Membrane protein.
  
   
 0.608
dapA-2
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.603
EES62900.1
Hypothetical protein.
  
     0.598
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.597
EES64840.1
Membrane protein.
  
   
 0.591
EES64749.1
TRAP transporter, DctQ-like membrane protein.
  
     0.563
EES64838.1
Hypothetical protein.
  
     0.554
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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