fucP protein (Fusobacterium varium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

fucP

L-fucose:H+ symporter permease. (459 aa)

Predicted Functional Partners:

EES64890.1

0.807

fucU

0.761

fucI

0.752

fucO

0.747

EES64892.1

0.532

galK

0.463

nifJ

0.452

EES63155.1

0.445

nagB

0.439

fruA

0.431

Your Current Organism:

Fusobacterium varium

NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EES63155.1	fruA	FVAG_00844	FVAG_00763	Transcriptional regulator, LacI family.	PTS system fructose-specific EIIABC component.	0.431
EES63155.1	fucP	FVAG_00844	FVAG_01571	Transcriptional regulator, LacI family.	L-fucose:H+ symporter permease.	0.445
EES64890.1	EES64892.1	FVAG_01573	FVAG_01575	Carbohydrate kinase, FGGY family protein.	Putative L-ribulose-5-phosphate 4-epimerase.	0.779
EES64890.1	fruA	FVAG_01573	FVAG_00763	Carbohydrate kinase, FGGY family protein.	PTS system fructose-specific EIIABC component.	0.566
EES64890.1	fucI	FVAG_01573	FVAG_01574	Carbohydrate kinase, FGGY family protein.	Arabinose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.926
EES64890.1	fucO	FVAG_01573	FVAG_01572	Carbohydrate kinase, FGGY family protein.	Lactaldehyde reductase.	0.779
EES64890.1	fucP	FVAG_01573	FVAG_01571	Carbohydrate kinase, FGGY family protein.	L-fucose:H+ symporter permease.	0.807
EES64890.1	fucU	FVAG_01573	FVAG_01570	Carbohydrate kinase, FGGY family protein.	L-fucose mutarotase; Belongs to the RbsD / FucU family.	0.907
EES64890.1	galK	FVAG_01573	FVAG_01528	Carbohydrate kinase, FGGY family protein.	Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.	0.430
EES64892.1	EES64890.1	FVAG_01575	FVAG_01573	Putative L-ribulose-5-phosphate 4-epimerase.	Carbohydrate kinase, FGGY family protein.	0.779
EES64892.1	fruA	FVAG_01575	FVAG_00763	Putative L-ribulose-5-phosphate 4-epimerase.	PTS system fructose-specific EIIABC component.	0.519
EES64892.1	fucI	FVAG_01575	FVAG_01574	Putative L-ribulose-5-phosphate 4-epimerase.	Arabinose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.821
EES64892.1	fucO	FVAG_01575	FVAG_01572	Putative L-ribulose-5-phosphate 4-epimerase.	Lactaldehyde reductase.	0.494
EES64892.1	fucP	FVAG_01575	FVAG_01571	Putative L-ribulose-5-phosphate 4-epimerase.	L-fucose:H+ symporter permease.	0.532
EES64892.1	fucU	FVAG_01575	FVAG_01570	Putative L-ribulose-5-phosphate 4-epimerase.	L-fucose mutarotase; Belongs to the RbsD / FucU family.	0.561
fruA	EES63155.1	FVAG_00763	FVAG_00844	PTS system fructose-specific EIIABC component.	Transcriptional regulator, LacI family.	0.431
fruA	EES64890.1	FVAG_00763	FVAG_01573	PTS system fructose-specific EIIABC component.	Carbohydrate kinase, FGGY family protein.	0.566
fruA	EES64892.1	FVAG_00763	FVAG_01575	PTS system fructose-specific EIIABC component.	Putative L-ribulose-5-phosphate 4-epimerase.	0.519
fruA	fucP	FVAG_00763	FVAG_01571	PTS system fructose-specific EIIABC component.	L-fucose:H+ symporter permease.	0.431
fruA	galK	FVAG_00763	FVAG_01528	PTS system fructose-specific EIIABC component.	Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.	0.492