Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EES64893.1IclR helix-turn-helix domain protein. (257 aa)    
Predicted Functional Partners:
EES63486.1
Transcriptional regulator, GntR family.
  
  
 0.521
EES64745.1
KDPG and KHG aldolase.
 
   
 0.459
eda
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.
 
   
 0.458
EES64894.1
TRAP transporter solute receptor, DctP family.
       0.456
kduD
2-deoxy-D-gluconate 3-dehydrogenase.
 
   
 0.442
EES64960.1
Transcriptional regulator, GntR family.
  
  
 0.424
EES64895.1
TRAP transporter, DctQ-like membrane protein.
       0.420
EES64896.1
TRAP transporter, DctM subunit.
       0.406
EES64420.1
Transcriptional regulator, GntR family.
  
  
 0.401
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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