Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES64936.1Histidine kinase A domain protein. (441 aa)    
Predicted Functional Partners:
EES64937.1
Putative transcriptional regulatory protein WalR.
 
 
 0.956
EES64117.1
Putative transcriptional regulatory protein ResD.
 
 
 0.811
phoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 
 0.810
resD
Transcriptional regulatory protein ResD.
 
 
 0.809
EES64701.2
Response regulator receiver domain protein.
 
 
 0.809
phoP-3
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 
 0.809
EES65184.1
Putative transcriptional regulatory protein ResD.
 
 
 0.809
arlR
Response regulator ArlR.
 
 
 0.808
EES62802.2
Putative response regulator ArlR.
 
 
 0.796
phoP-2
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 
 0.796
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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