Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES64946.1Hypothetical protein. (190 aa)    
Predicted Functional Partners:
EES64947.1
Outer membrane protein transport protein, Ompp1/FadL/TodX family.
 
     0.894
EES64809.1
Hypothetical protein.
  
     0.690
rfaY-3
Lipopolysaccharide core biosynthesis protein RfaY.
  
     0.664
EES64465.1
Outer membrane protein.
  
    0.646
EES64725.2
Putative ACR, COG1399.
  
     0.632
EES65002.1
Tetratricopeptide repeat protein.
  
     0.630
EES63314.1
Mu transposase domain protein.
  
     0.613
ccpN
Transcriptional repressor CcpN.
  
  
 0.538
EES65314.1
Cell division protein FtsQ.
  
   
 0.532
fbp
Firmicute fructose-1,6-bisphosphatase.
       0.500
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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