Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES64244.1Hypothetical protein. (271 aa)    
Predicted Functional Partners:
EES64245.1
beta-alanyl-CoA:ammonia lyase.
  
 0.996
EES64243.1
Hypothetical protein.
 
  
 0.989
EES62357.2
Hypothetical protein.
  
  
 
0.921
EES63428.1
Hypothetical protein.
  
  
 
0.906
ctfA
Butyrate--acetoacetate CoA-transferase subunit A.
    
 0.904
ctfB
Butyrate--acetoacetate CoA-transferase subunit B.
    
 0.903
EES64239.1
D-Lysine 5,6-aminomutase alpha subunit.
 
   
 0.748
EES64238.1
B12 binding domain protein.
 
   
 0.741
EES64241.1
Hypothetical protein.
 
     0.642
EES63241.1
Putative cyclase.
 
    0.459
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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