Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EES64275.1TRAP transporter, DctQ-like membrane protein. (158 aa)    
Predicted Functional Partners:
siaT
Sialic acid TRAP transporter permease protein SiaT.
 
 0.978
EES64895.1
TRAP transporter, DctQ-like membrane protein.
  
  
  0.964
EES64276.1
TRAP transporter, DctM subunit.
 
 0.961
EES64274.1
TRAP transporter solute receptor, DctP family.
 
 
 0.960
EES62353.1
TRAP transporter, DctQ-like membrane protein.
  
  
  0.944
siaP
Sialic acid-binding periplasmic protein SiaP.
 
 
 0.761
EES64748.2
TRAP transporter solute receptor, DctP family.
 
 
 0.758
EES64277.1
AP endonuclease, family 2.
 
     0.757
EES64894.1
TRAP transporter solute receptor, DctP family.
 
 
 0.755
EES64896.1
TRAP transporter, DctM subunit.
 
 0.749
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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