Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES64415.1Putative transcriptional regulatory protein CusR. (225 aa)    
Predicted Functional Partners:
EES62803.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
 
 
 0.939
EES62950.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
 
 
 0.768
hymB
Protein HymB.
   
 
 0.761
EES64416.2
Channel protein, hemolysin III family.
     
 0.750
EES64414.2
Hypothetical protein.
       0.746
EES64936.1
Histidine kinase A domain protein.
 
 
 0.723
EES64984.1
Response regulator receiver domain protein; Overlaps another CDS with the same product name.
  
   
 0.709
EES64413.1
Putative acyl carrier protein.
     
 0.675
EES65183.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
 
 
 0.592
EES64985.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Overlaps another CDS with the same product name.
 
 
 0.590
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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