Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES64435.1ABC transporter, substrate-binding protein, QAT family. (319 aa)    
Predicted Functional Partners:
opuAB
Glycine betaine transport system permease protein opuAB.
 
 0.999
proV
Glycine betaine/L-proline transport ATP-binding protein proV.
 
 0.999
EES62402.1
ABC transporter, substrate-binding protein, QAT family.
 
 
 0.986
EES64186.2
Hypothetical protein.
  
 
 0.902
EES64312.1
ABC transporter, ATP-binding protein.
    
 0.718
EES65078.1
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
    
 0.718
EES62403.1
ABC transporter, ATP-binding protein.
  
 
 0.714
lptB
Lipopolysaccharide ABC transporter, ATP-binding protein LptB.
    
  0.713
EES62801.1
Hypothetical protein.
     
  0.711
EES63222.2
ROK family protein.
     
  0.711
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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