Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES65148.1Hypothetical protein. (88 aa)    
Predicted Functional Partners:
yedF
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
 
   
 0.853
selB
Selenocysteine-specific translation elongation factor.
 
     0.805
EES65145.1
Hypothetical protein.
 
     0.787
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
     0.770
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
       0.751
EES64409.1
Hypothetical protein.
  
     0.656
EES65153.1
Ppx/GppA phosphatase family protein.
 
     0.551
EES63501.1
Hypothetical protein.
  
     0.504
EES64320.1
Cysteine-rich small domain protein.
  
     0.432
EES64965.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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