Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EES65157.1Positive regulator of sigma(E), RseC/MucC. (150 aa)    
Predicted Functional Partners:
EES65002.1
Tetratricopeptide repeat protein.
  
     0.729
EES65314.1
Cell division protein FtsQ.
  
     0.701
EES64809.1
Hypothetical protein.
  
     0.697
EES64947.1
Outer membrane protein transport protein, Ompp1/FadL/TodX family.
  
     0.689
EES65158.1
Hypothetical protein.
 
     0.684
EES64237.2
SH3 domain protein.
  
     0.678
cvpA
CvpA family protein.
  
     0.659
rfaY-3
Lipopolysaccharide core biosynthesis protein RfaY.
  
     0.650
EES64465.1
Outer membrane protein.
  
     0.615
rnfG
Electron transport complex, RnfABCDGE type, G subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.
 
     0.588
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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