Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EES63614.1Putative sensory transduction protein LytT. (240 aa)    
Predicted Functional Partners:
EES63615.1
LytS/YhcK-type transmembrane receptor domain protein.
 
 0.997
EES63975.2
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
 
 
 0.886
EES62736.1
Putative TIGR00659 family protein.
    
 0.725
CstA
Carbon starvation protein CstA.
     
 0.580
EES62803.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
 
   
 0.554
proA
Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
    
   0.427
nifJ
Pyruvate synthase.
  
    0.417
EES64269.1
DNA-binding helix-turn-helix protein.
 
  
 0.413
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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