Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES63699.1Putative nickel transport system permease protein NikB. (312 aa)    
Predicted Functional Partners:
EES63700.1
Putative dipeptide ABC transporter, permease protein DppC.
 0.988
EES63702.1
Putative oligopeptide ABC transporter, ATP-binding protein AppD.
 
 0.968
EES63703.1
Putative oligopeptide ABC transporter, ATP-binding protein AppF; Belongs to the ABC transporter superfamily.
 
 0.963
EES63701.1
ABC transporter, substrate-binding protein, family 5.
 
 
 0.954
EES64180.1
Putative oligopeptide ABC transporter, permease protein AppC.
 0.947
oppD
Oligopeptide ABC transporter, ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 0.901
appF
Oligopeptide ABC transporter, ATP-binding protein AppF; Belongs to the ABC transporter superfamily.
 
 0.899
EES64182.1
Putative oligopeptide ABC transporter, ATP-binding protein AppF.
 
 0.896
EES64181.1
ABC transporter, ATP-binding protein.
 
 0.890
dppC
Dipeptide ABC transporter, permease protein DppC.
0.857
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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