Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES63794.1Outer membrane autotransporter barrel domain protein. (1123 aa)    
Predicted Functional Partners:
EES62671.1
Hypothetical protein.
 
     0.734
EES63284.1
Outer membrane insertion signal domain protein.
  
     0.700
EES62733.1
Tetratricopeptide repeat protein.
 
     0.663
EES63454.2
PHP domain protein.
  
     0.647
EES64573.2
Hypothetical protein.
  
    0.644
EES65158.1
Hypothetical protein.
  
     0.623
EES65002.1
Tetratricopeptide repeat protein.
 
     0.621
EES64536.1
Cyclically-permuted mutarotase family protein.
  
     0.612
EES63028.1
TonB-dependent receptor plug domain protein.
  
     0.611
EES64809.1
Hypothetical protein.
  
     0.586
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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