Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES63956.1Hypothetical protein. (145 aa)    
Predicted Functional Partners:
EES64466.1
Outer membrane protein, OMP85 family.
  
     0.765
EES62612.1
Permease, YjgP/YjgQ family.
 
     0.752
EES62613.1
Permease, YjgP/YjgQ family.
 
     0.727
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
       0.715
EES64658.1
Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
 
     0.615
EES65181.1
Outer membrane efflux protein.
  
     0.581
EES64809.1
Hypothetical protein.
  
     0.539
EES62715.1
Hypothetical protein.
  
     0.538
EES62894.1
Tetratricopeptide repeat protein.
 
 
 0.535
EES64465.1
Outer membrane protein.
  
     0.533
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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