Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
hup-16DNA-binding protein HU; Belongs to the bacterial histone-like protein family. (89 aa)    
Predicted Functional Partners:
EES63961.2
Hypothetical protein.
       0.773
EES63284.1
Outer membrane insertion signal domain protein.
  
     0.508
EES63794.1
Outer membrane autotransporter barrel domain protein.
  
     0.498
EES64536.1
Cyclically-permuted mutarotase family protein.
  
     0.490
EES63251.1
Outer membrane autotransporter barrel domain protein.
  
     0.472
EES63106.1
Phage protein F-like protein.
  
     0.455
EES63107.1
Phage virion morphogenesis protein.
  
     0.448
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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