Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES63963.1Diguanylate cyclase (GGDEF) domain protein. (867 aa)    
Predicted Functional Partners:
EES62803.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
 
0.999
EES63962.1
Hypothetical protein.
 
 
 0.999
EES64318.1
Diguanylate cyclase (GGDEF) domain protein.
 
 
0.994
EES64985.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Overlaps another CDS with the same product name.
 
 
 0.979
EES63497.1
Cyclic diguanylate phosphodiesterase (EAL) domain protein.
 
 
0.973
EES64319.1
Diguanylate cyclase (GGDEF) domain protein.
 
 
0.962
EES64545.1
Diguanylate cyclase (GGDEF) domain protein.
 
 
0.960
EES62421.1
HDIG domain protein.
 
 
 0.920
EES62801.1
Hypothetical protein.
  
 
 0.919
EES64866.1
STAS domain protein; Belongs to the anti-sigma-factor antagonist family.
  
  
 0.913
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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