Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gluDGlutamate dehydrogenase, NAD-specific; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (420 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase.
  
  
 0.842
EES63036.1
Putative NAD-dependent deacetylase.
  
 0.830
trxA
Thioredoxin; Belongs to the thioredoxin family.
  
  
 0.714
trxA-2
Thioredoxin; Belongs to the thioredoxin family.
  
  
 0.714
pgsA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.708
cdsA
Phosphatidate cytidylyltransferase.
      0.707
hbd
3-hydroxybutyryl-CoA dehydrogenase.
   
 
 0.704
lon
Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
  
 
  0.675
abfD
Gamma-aminobutyrate metabolism dehydratase/isomerase.
      
 0.657
pta
Phosphate acetyltransferase.
  
  
 0.612
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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