Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
fldBR-phenyllactate dehydratase, medium subunit. (441 aa)    
Predicted Functional Partners:
hgdB
(R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit.
 
     0.944
EES64027.1
Hypothetical protein.
 
     0.915
EES65074.1
Putative CoA-substrate-specific enzyme activase.
 
 
 0.868
gctB
Glutaconate CoA-transferase subunit B.
 
     0.770
gctA
Glutaconate CoA-transferase subunit A.
 
     0.769
gcdA
glutaconyl-CoA decarboxylase subunit alpha.
 
     0.748
EES64028.1
biotin--[acetyl-CoA-carboxylase] ligase.
 
     0.590
EES63775.1
Hypothetical protein.
 
     0.551
EES64032.1
4Fe-4S binding domain protein.
 
     0.501
EES63632.1
Hypothetical protein.
  
     0.483
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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